Supported Formats


Pixels represents our estimation of Bio-Formats's ability to reliably extract complete and accurate pixel values from files in that format. The better this score, the more confident we are that Bio-Formats will successfully read your file without displaying an error message or displaying an erroneous image.

Metadata is our certainty in the thoroughness and correctness of Bio-Formats's metadata extraction and conversion from files of that format into standard OME-XML. The better this score, the more confident we are that all meaningful metadata will be parsed and populated as OME-XML.

Openness is not a direct expression of Bio-Formats's performance, but rather indicates the level of cooperation the format's controlling interest has demonstrated toward the scientific community with respect to the format. The better this score, the more tools (specification documents, source code, sample files, etc.) have been made available.

Presence is also not directly related to Bio-Formats, but instead represents our understanding of the format's popularity, and doubles as a measure of compatibility between applications. The better this score, the more common the format and the more software packages include support for it.

Utility is our opinion of the format's suitability for storing metadata-rich microscopy image data. The better this score, the wider the variety of information that can be effectively stored in the format.

Click on a format name to see all information. Click on table headers to sort.

Export Format Extensions Pixels Openness Presencesort icon Utility
AVI (Audio Video Interleave) .avi
Windows Bitmap .bmp
GIF (Graphics Interchange Format) .gif
JPEG .jpg
PNG (Portable Network Graphics) .png
QuickTime Movie .mov
TIFF (Tagged Image File Format) .tif
Bio-Rad PIC .pic, .raw, .xml
EPS (Encapsulated PostScript) .eps, .epsi, .ps
ICS (Image Cytometry Standard) .ics, .ids
Leica LCS LEI .lei, .tif
MetaMorph Stack (STK) .stk, .nd
Nikon NIS-Elements ND2 .nd2
3i SlideBook .sld
PICT (Macintosh Picture) .pict
Zeiss LSM (Laser Scanning Microscope) 510 .lsm, .mdb
Adobe Photoshop PSD .psd
JPX .jpx
Analyze 7.5 .img, .hdr
Animated PNG .png
Aperio SVS TIFF .svs
DeltaVision .dv, .r3d
DICOM .dcm, .dicom
FITS (Flexible Image Transport System) .fits
Improvision Openlab LIFF .liff
JPEG 2000 .jp2
Leica LAS AF LIF (Leica Image File Format) .lif
Li-Cor L2D .l2d, .tif, .scn
MINC MRI .mnc
MRC (Medical Research Council) .mrc
NIfTI .img, .hdr
Olympus FluoView FV1000 .oib, .oif
Olympus FluoView TIFF .tif
PGM (Portable Gray Map) .pgm
Zeiss AxioVision ZVI (Zeiss Vision Image) .zvi
Bruker MRI
Targa .tga
Photoshop TIFF .tif, .tiff
SPIDER .spi, .stk
IMAGIC .hed, .img
Canon DNG .cr2, .crw
Hitachi S-4800 .txt, .tif, .bmp, .jpg
Amersham Biosciences Gel .gel
Andor Bio-Imaging Division (ABD) TIFF .tif
Bitplane Imaris .ims
FEI .img
Gatan Digital Micrograph .dm3
Hamamatsu Aquacosmos NAF .naf
ImagePro Sequence .seq
Applied Precision CellWorX .htd, .pnl,
InCell 1000 .xdce, .tif
IPLab .ipl
MetaMorph 7.5 TIFF .tiff
μManager .tif, .txt
Minolta MRW .mrw
MNG (Multiple-image Network Graphics) .mng
NRRD (Nearly Raw Raster Data) .nrrd, .nhdr, .raw, .txt
OME-TIFF .ome.tiff
OME-XML .ome
PerkinElmer UltraView .tif, .2, .3, .4, ...
Prairie Technologies TIFF .tif, .xml, .cfg
Amira Mesh .am, .amiramesh, .grey, .hx, .labels
Improvision TIFF .tif
Lambert Instruments FLIM .fli
Hamamatsu HIS .his
Quesant .afm
Molecular Imaging .stp
Topometrix .tfr, .ffr, .zfr, .zfp, .2fl
JEOL .dat, .img, .par
Seiko .xqd, .xqf
Oxford Instruments .top
LEO .sxm
Burleigh .img
Unisoku .dat, .hdr
BD Pathway .exp, .tif
RHK .sm2, .sm3
SM Camera
SBIG
JPK .jpk
Gatan Digital Micrograph 2 .dm2
WA-TOP .wat
ECAT7 .v
FEI TIFF .tiff
Varian FDF .fdf
SimplePCI & HCImage TIFF .tiff
Nikon Elements TIFF .tiff
InCell 3000 .frm
Trestle .tif, .sld, .jpg
Olympus SIS TIFF .tiff
Hamamatsu VMS .vms
Hamamatsu .ndpi .ndpi
cellSens VSI .vsi
INR .inr
Volocity Library Clipping .acff
Kodak BIP .bip
Axon Raw Format .arf
Alicona 3D .al3d
Becker & Hickl SPCImage .sdt
Cellomics .c01
Evotec/PerkinElmer Opera Flex .flex
ImagePro Workspace .ipw
Improvision Openlab Raw .raw
IPLab-Mac .ipm
Khoros VIFF (Visualization Image File Format) Bitmap .xv
LIM (Laboratory Imaging/Nikon) .lim
NEF (Nikon Electronic Format) .nef, .tif
Olympus CellR/APL .apl, .mtb, .tnb, .tif, .obsep
PCX (PC Paintbrush) .pcx
SimplePCI & HCImage .cxd
TillPhotonics TillVision .vws
VisiTech XYS .xys, .html
MIAS (Maia Scientific) .tif
Nikon EZ-C1 TIFF .tiff
Olympus ScanR .xml, .dat, .tif
Bio-Rad Gel .1sc
Imacon .fff
UBM .pr3
VG SAM .dti
Perkin Elmer Densitometer .pds
AIM .aim
Volocity .mvd2
Text .txt