Sample Data


All sample data sent to LOCI for testing is kept confidential unless explicit permission is given. Below are freely available data sets.
Nico Stuurman
Vale Laboratory
Image Cytometry Standard
256 x 256
42,831 bytes
8 bits per sample
Clay Glennon
UW-Madison
Leica
256 x 256
83,581 bytes
8 bits per sample
3 focal planes
Scanalytics
IPLab
650 x 515
691,397 bytes
8 bits per sample
3 channels
Dennis Fan
Windows Bitmap
384 x 384
2,083,265 bytes
8 bits per sample
9 focal planes
3 channels
Image-Pro
512 x 512
3,296,110 bytes
8 bits per sample
30 focal planes
QuickTime
320 x 240
5,523,978 bytes
24 bits per sample
108 time points
3 channels
William Mohler
BIo-Rad PIC
192 x 128
5,742,740 bytes
8 bits per sample
12 time points
9 focal planes
Image-Pro workspace
256 x 256
12,642,856 bytes
8 bits per sample
7 time points
24 focal planes
2 channels
Mark Browne
Andor Technology
ABD TIFF
256 x 256
16,163,765 bytes
16 bits per sample
5 time points
4 focal planes
2 channels
5 fields
Josh Bembenek
TIFF
1024 x 1024
22,463,680 bytes
8 bits per sample
10 time points
9 focal planes
Kevin O'Connell
NIDDK
PerkinElmer
672 x 512
23,911,099 bytes
2 time points
29 focal planes
3 channels
Jay Campbell
Gatan DM3
4096 x 4096
25,689,710 bytes
16 bits per sample
Jayne Squirrell
Bio-Rad PIC
512 x 512
42,939,725 bytes
8 bits per sample
45 time points
5 focal planes
Timothy Gomez
Anatomy
UW-Madison
Olympus Fluoview TIFF
512 x 512
50,556,723 bytes
16 bits per sample
16 time points
21 focal planes
Zeiss
Zeiss LSM
400 x 300
54,055,250 bytes
8 bits per sample
19 time points
21 focal planes
2 channels
Kevin O'Connell
NIDDK
Openlab LIFF
672 x 512
59,092,227 bytes
33 time points
3 channels
dub
William Mohler
Health Center
Bio-Rad PIC
768 x 512
756,808,942 bytes
8 bits per sample
85 time points
33 focal planes

4D dataset of C. elegans embryo development up to 8-cell stage

Kevin O'Connell
NIDDK
TIFF
425x434
294,270,460 bytes
12 focal planes

Mouse kidney section from Invitrogen's FluoCell prepared slide #3. The section is stained with Alexafluor 488 WGA, Alexafluor 568 phalloidin and DAPI, and is imaged as two series: an XYZ stack (25 planes), and an XZY version (46 planes) of the same zone.

Jean-Yves Tinevez & Samantha Blazquez-Vilarrubias
PFID - ImagopĂ´le
Institut Pasteur
Leica LIF
512 x 512
84,788,147 bytes
16 bits per sample
71 focal planes
4 channels