OME at LOCI - VisBio - Sample data

OME at LOCI – Software – VisBio – Sample data

Looking for some sample data to try out in VisBio?

qdna1
ICS
8 bits per sample
42,831 bytes
256 x 256 pixels
Nico Stuurman of the Vale Laboratory at the University of California-San Francisco has provided an image in Image Cytometry Standard format.

leica_stack
Leica
8 bits per sample
83,581 bytes
256 x 256 pixels
3 focal planes
Clay Glennon of the Wisconsin National Primate Research Center at the UW-Madison has provided a dataset in Leica format.

Blend_Final
IPLab
8 bits per sample
691,397 bytes
650 x 515 pixels
3 channels
Scanalytics has provided a sample multi-channel image in IPLab format.

kidney_TFl
Windows BMP
8 bits per sample
2,083,265 bytes
384 x 384 pixels
9 focal planes
3 channels
Dennis Fan of the Department of Mechanical and Materials Engineering at Florida International University has provided a dataset in Windows Bitmap format.

HEART
Image-Pro sequence
8 bits per sample
3,296,110 bytes
512 x 512 pixels
30 focal planes
A sample Z series in Image-Pro sequence format.

wtembryo
QuickTime movie
24 bits per sample
5,523,978 bytes
320 x 240 pixels
108 time points
3 channels (gray)
A sample timelapse dataset in QuickTime movie format.

sdub
Bio-Rad PIC
8 bits per sample
5,742,740 bytes
192 x 128 pixels
12 time points
9 focal planes
William Mohler of the University of Connecticut-Farmington has provided a dataset of a C. elegans embryo undergoing cell fusion. The embryo was stained with a fluorescent membrane probe (FM4-64) and imaged with multiphoton microscopy.
This dataset is a scaled down version of the dub dataset, below.
VisBio possesses the capability to automatically download this dataset via the "File > Sample datasets" menu.

mitosis-test
Image-Pro workspace
8 bits per sample
12,642,856 bytes
256 x 256 pixels
7 time points
24 focal planes
2 channels
A sample 4D series with intensity and transmitted channels in Image-Pro workspace format.

MF-2CH-Z-T
ABD TIFF
16 bits per sample
16,163,765 bytes
256 x 256 pixels
5 time points
4 focal planes
2 channels
5 fields
Mark Browne of Andor Technology's Bio-imaging Division has provided a multi-field, 2-channel Z-T series in Andor Bio-imaging Division TIFF format.

NESb
TIFF
8 bits per sample
22,463,680 bytes
1024 x 1024 pixels
10 time points
9 focal planes
Josh Bembenek of UW-Madison's John White Laboratory has provided a 4D series in multi-page TIFF format.

KEVIN2-3
PerkinElmer
23,911,099 bytes
672 x 512 pixels
2 time points
29 focal planes
3 channels
Kevin O'Connell of NIH/NIDDK's Laboratory of Biochemistry and Genetics has provided a multichannel 4D series in PerkinElmer format.

dnasample1
Gatan DM3
16 bits per sample
25,689,710 bytes
4096 x 4096 pixels
Jay Campbell of UW-Madison's John White Laboratory has provided an image in Gatan Digital Micrograph format.

TAABA
Bio-Rad PIC
8 bits per sample
42,939,725 bytes
512 x 512 pixels
45 time points
5 focal planes
Jayne Squirrell of UW-Madison's John White Laboratory has provided a two-photon dataset of a two-cell hamster embryo labeled with a mitochondria-specific dye, Mitotracker-X-Rosamine. The images were collected as a Z-series of five optical sections, 0.5 microns apart.
VisBio possesses the capability to automatically download this dataset via the "File > Sample datasets" menu.

10-31 E1
Olympus Fluoview TIFF
16 bits per sample
50,556,723 bytes
512 x 512 pixels
16 time points
21 focal planes
Timothy Gomez of the Department of Anatomy at the UW-Madison has provided a 4D series in Fluoview TIFF format.

2chZT
Zeiss LSM
8 bits per sample
54,055,250 bytes
400 x 300 pixels
19 time points
21 focal planes
2 channels
Zeiss has provided a sample multi-channel 4D series in Zeiss Laser Scanning Microscopy format.

embryo2
Openlab LIFF
59,092,227 bytes
672 x 512 pixels
33 time points
3 channels
Kevin O'Connell of NIH/NIDDK's Laboratory of Biochemistry and Genetics has provided a dataset in Openlab LIFF format. See the FAQ Q203 for details on how to import this dataset.

dub
Bio-Rad PIC
8 bits per sample
756,808,942 bytes
768 x 512 pixels
85 time points
33 focal planes
William Mohler of the University of Connecticut-Farmington has provided a dataset of a C. elegans embryo undergoing cell fusion. The embryo was stained with a fluorescent membrane probe (FM4-64) and imaged with multiphoton microscopy.

Last update: Monday, April 17, 2006