OME at LOCI –
Software – VisBio – Program features
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Flexible data transform engine allows for a wide range of image analysis
algorithms
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Sophisticated thumbnailing support
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Background thumbnailing allows immediate visualization
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Each data object's thumbnails are cached in their own companion
cache file in the same directory as the data object's source files
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Cache files are portable between computers
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Specific transforms include:
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Arbitrary slicing transform for visualizing cross-sections of an
image stack at any angle
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Overlays transform for annotating images, including colored and
grouped measurement lines, markers, boxes, ovals, arrows and text
in 2D
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Spectral mapping with weighted sliders allows visualization of
complex multispectral data in a standard color space
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Data sampling transform enables reduction in dataset size
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Maximum intensity projection
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Flexible export tools for creating Bio-Rad, QuickTime and TIFF data
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Generalized display model
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Create up to 32 displays for visualization
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Map any number of data objects to a display at once
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Show multiple data views side by side
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Powerful image stack visualization in 3D
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Full support for pan, rotate, zoom and animation
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Proper aspect ratio based on image size in microns
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Pixel component mapping with user-defined color tables
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Switch stack (Z) axis on the fly
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Control over individual slice visibility,
including mass toggling features
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Volume rendering, for viewing the structure as a semi-transparent 3D
solid
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Movie capturing for recording movies (e.g., 3D rotation)
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Support for many common microscopy formats with the
OME Bio-Formats package
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Connect to an
Open Microscopy Environment
database to upload and download datasets
Last update: Thursday, March 23, 2006
