Introduction to FIJI & Scripting with FIJIimagej1

Introductory FIJI workshops hosted by LOCI's Ellen Arena. A good starting point for those new to FIJI and ImageJ's software package.

ImageJ Scripting Parameters 1 & ImageJ Scripting Parameters 2imagej2

Additional tutorials on ImageJ/FIJI scripting led by Curtis Rueden

Instrument Tutorials

LINK System TutorialsLINK

This playlist contains three explanatory videos covering the LINK system's capabilities for OCT, SHG, and EBS.

Ultima System Tutorialsultima

This playlist contains general user guides for operation of our Ultima system.

Microscopy Principals

Second Harmonic Generation shg

This playlist contains several videos curated for all expertise levels, describing Second Harmonic Generation (SHG), a multiphoton microscopy technique.

Confocal Microscopyconf

Playlist with videos covering the principals of Confocal Microscopy

Educational Interests and Programs


This playlist contains several recorded seminars hosted by LOCI from years past.

History of the Light Microscopemichist

A slideshow covering Microscopes from the first recorded lens dating to the mid 700s BCE to modern light capture systems.

Microscopy Museum at LOCImicmuseum

Sample specimens from our collection of 100+ microscopes.

Exploratorium: Traits of Lifeexploratorium

Details on the Exploratorium in San Francisco, CA.

WORM Initiativeworm

Information on the WORM Initiative seeking to promote exploratory research in the classroom.